Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500316/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  142,489,638
 Normal Paired: 140,237,467 (98.42%)
 Chimeric Paired: 5,194 (0.00%)
 Chimeric Ambiguous: 1,507 (0.00%)
 Unmapped: 2,245,470 (1.58%)
 Ligation Motif Present: 12,809 (0.01%)
Alignable (Normal+Chimeric Paired): 140,242,661 (98.42%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-26T10:27:51,302]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,670,071 (29.95%)
PCR Duplicates: 97,572,590 (68.48%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 44,590,144
Intra-fragment Reads: 24,160,441 (16.96% / 56.62%)
Below MAPQ Threshold: 4,779,852 (3.35% / 11.20%)
Hi-C Contacts: 13,729,778 (9.64% / 32.18%)
 Ligation Motif Present: 4,676  (0.00% / 0.01%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 1,633,320  (1.15% / 3.83%)
Intra-chromosomal: 12,096,458  (8.49% / 28.35%)
Short Range (<20Kb): 7,807,525  (5.48% / 18.30%)
Long Range (>20Kb): 4,288,904  (3.01% / 10.05%)